TFcomb
Installation
Tutorials
Section 1: Process scATAC data
ArchR process scATAC-seq data
ArchR cell-by-peak matrix to scanpy
Section 2: Generate base GRN
Section 3: Process scRNA data to the input of TFcomb
Section 4: TFcomb main tutorial
API
TFcomb
Tutorials
Section 1: Process scATAC data
View page source
Section 1: Process scATAC data
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ArchR process scATAC-seq data
import packages
load fragment files & create arrow files
Clustering & UMAP plotting
Generate cell-by-peak matrix
save the results
ArchR cell-by-peak matrix to scanpy
import
Generate cell-by-peak matrix with Scanpy adata format