Section 2: Generate base GRN

• CellOracle - Cicero workflow
  • import
  • construct input cds
  • Qauality check and Filtering
  • create cicero cds
  • run cicero
• CellOracle - TSS annotation
  • import
  • load peak and get the cicero results
  • annotate tss
  • interate tss and cicero result
  • save data
• CellOracle - TF binding motif scan
  • import
  • reference genome preparation
  • load data
  • Check peak format
  • tf binding motifs search
  • filter and save