Index

_

__getitem__() (TFcomb.tools.GRN_Dataset method)

__len__() (TFcomb.tools.GRN_Dataset method)

A

adata_part (TFcomb.tools.GRN_Dataset attribute)

G

GAT_recover_links() (in module TFcomb.tools) get_benchmark_score() (in module TFcomb.tools) get_de_genes() (in module TFcomb.tools) get_directing_score() (in module TFcomb.tools) get_gene_color_dict() (in module TFcomb.plotting)

get_GRN_parameters() (in module TFcomb.tools) get_multi_TF() (in module TFcomb.tools) get_percentile_thre() (in module TFcomb.tools) get_single_TF() (in module TFcomb.tools) graph (TFcomb.tools.GRN_Dataset attribute) GRN_Dataset (class in TFcomb.tools)

I

import_TF_data() (in module TFcomb.tools)

M

module TFcomb.plotting TFcomb.preprocessing TFcomb.tools

O

oracle_preprocess() (in module TFcomb.preprocessing)

P

pca_umap_train() (in module TFcomb.preprocessing) pca_umap_vis() (in module TFcomb.preprocessing) plot_coef() (in module TFcomb.plotting)

plot_GRN() (in module TFcomb.plotting) plot_score_comparison() (in module TFcomb.plotting) process() (TFcomb.tools.GRN_Dataset method), [1]

S

select_add_TF() (in module TFcomb.tools)

T

tf_GRN_mtx (TFcomb.tools.GRN_Dataset attribute) TF_inference() (in module TFcomb.tools) tf_list (TFcomb.tools.GRN_Dataset attribute) TFcomb.plotting module

TFcomb.preprocessing module TFcomb.tools module